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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015795225.1_cds_XP_016442994.1_3737
CDS Infomation

[gene=LOC107768374] [db_xref=GeneID:107768374] [protein=vacuolar protein sorting-associated protein 35A-like isoform X2] [protein_id=XP_016442994.1] [location=complement(join(49510..49735,49827..49940,50076..50179,50271..50378,50491..50571,50651..50719,50893..50982,51267..51356,54109..54198,54347..54412,54498..54737,55000..55116,55878..55937,56012..56086,56584..56706,56800..56889,56989..57045,57244..57331,57503..57606))] [gbkey=CDS]
Sequence

ATGTGTCGTAGCATACAACATCCATTACGTGGGCTCTTCCTAAGGAGTTACCTTTCCCAA
GTCAGCAGGGATAAACTCCCTGATATAGGATCTGAATATGAAGGGGATGCTGACACTGCT
ATGGATGCTGTAGAATTCGTGCTCCAAAATTTCACAGAAATGAACAAACTTTGGGTGCGA
ATGCAACATCAGGGACCTGCACGGGAAAAGGAAAAACGTGAAAAAGAAAGGAGCGAGCTT
CGTGATCTTGTGGGGAAAAACCTGCATGTTCTAAGTCAAATTGAGGCCATTGACCTTGAT
TTGTACAAAGATATGGTGCTTCCTAGAGTTCTAGAGCAGGTTGTCAACTGTAAAGATGAG
ATTGCACAGGGATATTTGATGGATTGCATCATCCAAGTCTTCCCTGATGAGTACCACTTG
CAAACTCTTGAAACATTACTAGATGCTTGCCCCCAGTTTCAGCCATCTGTTGATATCAAG
ACAGTGCTTGCTCGTCTGATGGAAAGGCTTTCAAACTATGCTGCTTTAAGTGCAGAAGTC
TTACCTGAGTTTTTCCAGGTTGAAGCTTTCACAAAACTAAACAATGCCATAGGCAAGGTG
ATAGAGGCTCAAGAAGACATGCCTATTGCTGGAGTGGTGACTTTGTATGCATCTCTTTTG
ACATTTACTCTTCATGTCCACCCTGATCGCCTTGATTATGTAGATCAGATTCTGGGTGCC
TGTGTTCAGAAACTTTCTGGAAAAGGAAAGCTCAAAGACAATAAAGCAACAAAACAGATT
GTGGCCCTACTAAGTGCTCCCCTGGGGAAGTATAAGGATATAGATACTGTGCTAAAGCTG
TCAAATTATCCTCATCTTATGGAGTATCTTGATGATGCAACTAGTAAAGTGATGGCTAAT
GTTTTGGTTCAAAATATTCTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAGGTTGAG
GCACTTTTTGAGTTAATGAAAGCACTGATTAGAGATTTGGATGAGGATGTTAATGATGAG
CTTGATGTAGATGATTTCAAAGAAGAGCAGAATTCCGTTGCACGGCTTATTCAAATGCTT
CACAATGATGATCCTGAAGAGATGCTGAAGATGATTTGTGCTGTGCATAAACACATTTTG
ACAGGAGGACCAAAGAGGCTTCCTTGTACCATCCCTCCCCTTATTCTTAACTCTCTTAAG
TTTGTTAGGCGACTGCATAGTCATGATGAAAATGCTCCTGAGGATGAGGCATCTGCTATG
CCTGAGAAATTTTTTCAGATTCTGAATCAGATTATTGAGGCTCTCTCAATTGTTCCAGTA
CCGGAACTAGCGTTGAAGTTGTACTTGGAGTGTGCTGAGGCTGCTAATGATTCTGACCTA
GAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATGCTATATGAAGAAGAAATCTCG
GACTCCAAAGCACAGGTGACTGCAATACACTTGATAATTGGGACTCTTCAGAGAATGCAC
ATCTTTGGTGTTGAGAACAGGGATACATTAACGCACAAGGCCACAGGGTACTCTGCAAAG
CTCCTTAAGAAGCCTGATCAATGTAGGGCTGTATACGCTTGTTCACATCTTTTCTGGGTT
GACGATCAGGACAATATCAAGGATGGAGAAAGGGTTTTGCTTTGCTTAAAGCGGGCCTTA
AGGATTGCAAATGCTGCTCAACAAATGTCCACTGCAACCCGAGGAAGCAGTGGATCGGTC
TTGCTCTTTATAGAAATTCTAAACAAGTATCTATATTTCTTTGAGAAAGGGGTCTCACAG
ATTAATGTTGCCTCCATCCAGAGCCTGATTGAACTAATCACAACTGAAATGCAAAGCGAA
AATACAACAGCAGATCCTGCAGCAGATACCTACTTTGCAAGCACCCTGCGATATATCCAG
TTCCAGAAGGATAAAGGTGGTGCAGTTGGTGAGAAATACGAGCCAATCAGGCATCAAGTC
ATAATCAAATAG

Peptide Sequence

PEP ID

XP_016442994.1
PEP Infomation

PREDICTED: vacuolar protein sorting-associated protein 35A-like isoform X2 [Nicotiana tabacum]
Sequence

MCRSIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTAMDAVEFVLQNFTEMNKLWVR
MQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEAIDLDLYKDMVLPRVLEQVVNCKDE
IAQGYLMDCIIQVFPDEYHLQTLETLLDACPQFQPSVDIKTVLARLMERLSNYAALSAEV
LPEFFQVEAFTKLNNAIGKVIEAQEDMPIAGVVTLYASLLTFTLHVHPDRLDYVDQILGA
CVQKLSGKGKLKDNKATKQIVALLSAPLGKYKDIDTVLKLSNYPHLMEYLDDATSKVMAN
VLVQNILKNKTCISTAEKVEALFELMKALIRDLDEDVNDELDVDDFKEEQNSVARLIQML
HNDDPEEMLKMICAVHKHILTGGPKRLPCTIPPLILNSLKFVRRLHSHDENAPEDEASAM
PEKFFQILNQIIEALSIVPVPELALKLYLECAEAANDSDLEPVAYEFFTQAYMLYEEEIS
DSKAQVTAIHLIIGTLQRMHIFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV
DDQDNIKDGERVLLCLKRALRIANAAQQMSTATRGSSGSVLLFIEILNKYLYFFEKGVSQ
INVASIQSLIELITTEMQSENTTADPAADTYFASTLRYIQFQKDKGGAVGEKYEPIRHQV
IIK

Transcript Sequence

Gene sequence data has not been registered.